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Publications

78

Byeong Wook Jeon, Na Young Kang, Won-Yong Park, Eunkyoo Oh, Jungmook Kim*(2024)

Control of lateral root formation by rapamycin-induced dimerization of engineered RGI/BAK1 and by BIR3 chimera

Physiologia Plantarum. 176:e14155 *Corresponding author

77

Quy Thi Cam Nguyen and Jungmook Kim*(2023)

PSY–PSYR peptide–receptor pairs control the trade-off between plant growth and stress response

Plant Signaling & Behavior, 18:1, 2260638 *Corresponding author

76

Jae-Hoon Jung, Pil Joon Seo, Eunkyoo Oh and Jungmook Kim* (2023)

Temperature perception by plants

Trends in Plant Science. Aug;28(8):924-940. *Corresponding author

75

Byeong Wook Jeon and Jungmook Kim* (2023)

The RGI1–BAK1 module acts as the main receptor–coreceptor pair for regulating primary root gravitropism and meristem activity in response to RGF1 peptide in Arabidopsis

PLANT SIGNALING & BEHAVIOR. VOL. 18, NO. 1, e2229957 *Corresponding author

74

Uyen Thu Nguyen, Shashank K. Pandey and Jungmook Kim* (2023)

LBD18 and IAA14 antagonistically interact with ARF7 via the invariant Lys and acidic residues of the OPCA motif in the PB1 domain

Planta. 258:26.  doi: 10.1007/s00425-023-04183-3. *Corresponding author

73.

Byeong Wook Jeon, Jin Sun Kim, Eunkyoo Oh, Na Young Kang and Jungmook Kim* (2023)

ROOT MERISTEM GROWTH FACTOR1 (RGF1)-RGF1 INSENSITIVE1 peptide-receptor pair inhibits lateral root development via the MPK6-PUCHI module in Arabidopsis

Journal of Experimental Botany. 74, 1475-1488. *Corresponding author

72.

Kyounghee Lee, Ji Yun Go, Jihyeon Yu, Jun Hee Han, Ok-Sun Park, Jungmook Kim, Sangsu Bae, Yu Jin Jung, and Pil Joon Seo* (2021)

Arabidopsis ATXR2 represses de novo shoot organogenesis in the transition from callus to shoot formation

Cell Reports. 37, 109980

71.

Jin Sun Kim , Byeong Wook Jeon and Jungmook Kim* (2021)

Signaling peptides regulating abiotic stress responses in plants

Frontiers in Plant Science. 12, 704490. *Corresponding author

70.

Sara Kim†, Jeonghyang Park†, Byeong Wook Jeon†, Geonhee Hwang, Na Young Kang, Yeim We, Won-Young Park, Eunkyoo Oh*, and Jungmook Kim* (2021)

Chemical control of receptor kinase signaling by rapamycin-induced dimerization

Molecular Plant. 14, 1379-1390. †Equal contributing 1st authors. *Corresponding authors.

69.

Min-Jung Kim, Byeong Wook Jeon, Eunkyoo Oh, Pil Joon Seo, and Jungmook Kim* (2021)

Peptide signaling during plant reproduction

Trends in Plant Science. 26, 822-835. 1Equal contributing first authors. *Corresponding author

68.

Byeong Wook Jeon, Min-Jung Kim, Shashank K. Pandey, Eunkyoo Oh, Pil Joon Seo, and Jungmook Kim* (2021)

Recent advances in peptide signaling during Arabidopsis root development

Journal of Experimental Botany. 72, 2889-2902. 1Equal contributing authors. *Corresponding author. https://academic.oup.com/jxb/article/72/8/2889/6141412?guestAccessKey=9c8543bb-a5dc-467d-917d-55ffde277626

67.

Sun Ui Yang, Hyojin Kim, Ryeo Jin Kim, Jungmook Kim, and Mi Chung Suh (2020)

AP2/DREB transcription factor RAP2.4 activates cuticular wax biosynthesis in Arabidopsis leaves under drought

Frontiers in Plant Science.

66.

Sara Kim, Geonhee Hwang, Soohwan Kim, Thom Nguyen Thi, Hanim Kim, Jinkil Jeong, Jaewook Kim, Jungmook Kim, Giltsu Choi & Eunkyoo Oh* (2020)

The epidermis coordinates thermoresponsive growth through the phyB-PIF4-auxin pathway

Nature Communications. 11:1053

65.

Han Woo Lee, Chuloh Cho, Shashank K. Pandey, Yoona Park, Min-Jung Kim, and Jungmook Kim* (2019)

LBD16 and LBD18 acting downstream of ARF7 and ARF19 are involved in adventitious root formation in Arabidopsis

BMC Plant Biology. 19:46

64.

Chuloh Cho, Eunkyeong Jeon, Shashank K. Pandey, Se Hoon Ha, and Jungmook Kim* (2019)

LBD13 positively regulates lateral root formation in Arabidopsis

Planta. 249: 1251-1258. 1These authors contributed equally to this work.

63.

Byeong Wook Jeon and Jungmook Kim* (2018)

Role of LBD14 during ABA-mediated control of root system architecture in Arabidopsis

Plant Signaling and Behavior. 13(8), e1507450

62.

Shashank K. Pandey, Han Woo Lee, Min-Jung Kim, Chuloh Cho, Eunkyoo Oh, and Jungmook Kim* (2018)

LBD18 uses a dual mode of a positive feedback loop to regulate ARF expression and transcriptional activity in Arabidopsis

Plant Journal. 95, 233-251

61.

Eunkyoo Oh, Pil Joon Seoa, and Jungmook Kim* (2018)

Signaling Peptides and Receptors Coordinating Plant Root Development

Trends in Plant Science. 23: 337-351. Featured Article. aThese authors contributed equally to this work.

60.

Shashank K. Pandey and Jungmook Kim* (2018)

Coiled-coil motif in LBD16 and LBD18 transcription factors are critical for dimerization and biological function in arabidopsis

Plant Signaling and Behavior. 13(1): e1411450

59.

Sara Kim, Geonhee Hwang, Seulgi Lee, Jia-Ying Zhu, Inyup Paik, Thom Thi Nguyen, Jungmook Kim and Eunkyoo Oh* (2017)

High Ambient Temperature Represses Anthocyanin Biosynthesis through Degradation of HY5

Frontiers in Plant Science. 8: 1787

58.

Eunkyeong Jeon, Na Young Kang, Chuloh Cho, Pil Joon Seo, Mi Chung Suh, and Jungmook Kim* (2017)

LBD14/ASL17 Positively Regulates Lateral Root Formation and Is Involved in ABA Response for Root Architecture in Arabidopsis

Plant and Cell Physiology. 58(12), 2190-2201. Featured in Research Highlights.

57.

Geonhee Hwang, Jia-Ying Zhu, Young K. Lee, Sara Kim, Thom T. Nguyen, Jungmook Kim, and Eunkyoo Oh* (2017)

PIF4 promotes expression of LNG1 and LNG2 to induce thermomorphogenic growth in Arabidopsis

Frontiers in Plant Science. 8: 1320

56.

Han Woo Lee, Na Young Kang, Shashank K. Pandey, Chuloh Cho, Sung Haeng Lee, Jungmook Kim* (2017)

Dimerization in LBD16 and LBD18 Transcription Factors Is Critical for Lateral Root Formation

Plant Physiology. 174(1): 301-311

55.

Jungmook Kim (2016)

CYTOKININ RESPONSE FACTORs gating environmental signals and hormones

Trends in Plant Science. 21(12): 993-996

54.

Mirim Kim, Min-Jung Kim, Shashank Pandey, and Jungmook Kim* (2016)

Expression and protein interaction analyses reveal combinatorial interactions of LBD transcription factors during Arabidopsis pollen development

Plant and Cell Physiology. 57(11): 2291-2299

53.

Jin Jeon, Chuloh Cho, Mi Rha Lee, Nguyen Van Binh, and Jungmook Kim* (2016)

CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 regulate lateral root development in response to cold stress in Arabidopsis

Plant Cell. 28(8): 1828-1843

52.

Min-Jung Kim, Mirim Kim & Jungmook Kim* (2016)

Semi-thin sectioning, light and fluorescence microscopy of floral bud to study microspore development in Arabidopsis

Bio-protocol. 6(5): e1752

50.

Min-Jung Kim, Mirim Kim & Jungmook Kim* (2015)

Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis

Plant Signaling & Behavior. 10(8)e1044193

49.

Han Woo Lee, Chuloh Cho and Jungmook Kim* (2015)

LBD16 and LBD18 act downstream of the AUX1 and LAX3 auxin influx carriers to control lateral root development in Arabidopsis thaliana

Plant Physiology. 168(4): 1792-1806

48.

Min-Jung Kim, Mirim Kim, Mi Rha Lee, Soon Ki Park and Jungmook Kim* (2015)

LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis.

Plant Journal. 81(5): 794–809

47.

Won-Chan Kim, Joo-Yeol Kim, Jae-Heung Ko, Hunseung Kang, Jungmook Kim and Kyung-Hwan Han* (2014)

AtC3H14, a plant-specific tandem CCCH zinc-finger protein, binds to its target mRNAs in a sequence-specific manner and affects cell elongation in Arabidopsis thaliana.

Plant Journal. 80(5): 772-784

46.

Han Woo Lee, Jong Hwa Park, Moung Yeon Park, and Jungmook Kim* (2014)

GIP1 may act as a coactivator that enhances transcriptional activity of LBD18 in Arabidopsis.

Journal of Plant Physiology. 171: 14-18

45.

Na Young Kang, Chuloh Cho, and Jungmook Kim* (2013)

Inducible expression of Arabidopsis Response Regulator 22 (ARR22), a type-C ARR, in transgenic Arabidopsis enhances drought and freezing tolerance.

PLOS ONE. 8(11): e79248

44.

Han Woo Lee and Jungmook Kim* (2013)

EXPANSIN17 upregulated by LBD18/ASL20 promotes lateral root formation during the auxin response.

Plant and Cell Physiology. 54(10): 1600-1611. Editor-in-Chief's choice article

43.

Na Young Kang, Han Woo Lee, and Jungmook Kim* (2013)

The AP2/EREBP gene PUCHI coacts with LBD16/ASL18 and LBD18/ASL20 downstream of ARF7 and ARF19 to regulate lateral root development in Arabidopsis.

Plant and Cell Physiology. 54(8): 1326-1334.

42.

Won-Chan Kim, Joo-Yeol Kim, Jae-Heung Ko, Jungmook Kim, and Kyung-Hwan Han* (2013)

Transcription factor MYB46 is an obligate component of the transcriptional regulatory complex for functional expression of secodary wall-associated cellulose synthases in Arabidopsis thaliana.

Journal of Plant Physiology. 170: 1374–1378

41.

Han Woo Lee, Min-Jung Kim, Moung Yeon Park, Kyung-Hwan Han and Jungmook Kim* (2013)

The conserved proline residue in the LOB domain of LBD18 is critical for DNA-binding and biological function.

Molecular Plant. 6(5): 1722–1725

40.

Jin Jeon and Jungmook Kim* (2013)

Cold stress signaling networks in Arabidopsis.

Journal of Plant Biology. 56: 69-76.

39.

Jungmook Kim* and Jin Jeon (2013)

Cold signaling via the two-component signaling system.

Molecular Plant. 6(1): 15-17.

38.

Jungmook Kim* and Han Woo Lee (2013)

Direct activation of EXPANSIN14 by LBD18 in the gene regulatory network of lateral root formation in Arabidopsis.

Plant Signaling & Behavior. 8(2): e22979.

37.

Jin Jeon and Jungmook Kim* (2013)

ARABIDOPSIS RESPONSE REGULATOR 1 (ARR1) and ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 2 (AHP2), AHP3, and AHP5 Function in Cold Signaling.

Plant Physiology. 161(1): 408-424.

36.

Hongjiang Li, Tongda Xu, Deshu Lin, Mingzhang Wen, Mingtang Xie, Jerome Duclercq, Agnieszka Bielach, Jungmook Kim, G. Venugopala Reddy, Jianru Zuo, Eva Benkova, Jiři Friml, Hongwei Guo, Zhenbiao Yang* (2013)

Cytokinin signaling regulates pavement cell morphogenesis in Arabidopsis.

Cell Research. 23: 290-299.

35.

Han Woo Lee, Min-Jung Kim, Nan Young Kim, Sung Haeng Lee, and Jungmook Kim* (2013)

LBD18 acts as a transcriptional activator that directly binds to the EXPANSIN14 promoter in promoting lateral root emergence of Arabidopsis.

Plant Journal. 73(2): 212-224.

34.

Won-Chan Kim, Jae-Heung Ko, Joo-Yeol Kim, Jungmook Kim, Hyeun-Jong Bae, and Kyung-Hwan Han* (2013)

MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis.

Plant Journal. 72: 26-36.

33.

Young Sam Go, Saet Buyl Lee, Hae Jin Kim, Jungmook Kim, Hyo-Young Park, Jeong-Kook Kim, Kyomi Shibata, Takao Yokota, Kiyoshi Ohyama, Toshiya Muranaka, Simeon Arseniyadis and Mi Chung Suh* (2012)

Identification of the unusual triterpenoid pathway via marneral synthase, which is critical for Arabidopsis growth and development.

Plant Journal. 72: 791-804.

32.

Na Young Kang, Chuloh Cho, Nan Young Kim, and Jungmook Kim* (2012)

Cytokinin receptor-dependent and receptor-independent pathways in the dehydration response of Arabidopsis thaliana.

Journal of Plant Physiology. 169: 1382-1391. *Corresponding author.

31.

Min-Jung Kim and Jungmook Kim* (2012)

Identification of nuclear localization signal in ASYMMETRIC LEAVES2-LIKE18/ LATERAL ORGAN BOUNDARIES DOMAIN16 (ASL18/LBD16) from Arabidopsis.

Journal of Plant Physiology. 169: 1221-1226. *Corresponding author.

30.

Jin Jeon and Jungmook Kim* (2011)

FVE, an Arabidopsis homologue of the retinoblastoma-associated protein that regulates flowering time and cold response, binds to chromatin as a large multiprotein complex.

Molecules and Cells. 32: 227-234. *Corresponding author.

29.

Jin Jeon, Nan Young Kim, Sunmi Kim, Na Young Kang, Ondrej Novak, Su-Jin Ku, Chuloh Cho, Dong Ju Lee, Eun-Jung Lee, Miroslav Strnad, and Jungmook Kim* (2010)

A subset of cytokinin two-component signaling system plays a role in cold temperature stress response in Arabidopsis.

Journal of Biological Chemistry. 285: 23371-23386. *Corresponding author.

28.

Pil Joon Seo, Mi Jung Kim, Ju-Young Park, Sun-Young Kim, Jin Jeon, Yong-Hwan Lee, Jungmook Kim, Chung-Mo Park (2010)

Cold activation of a plasma membrane-tethered NAC transcription factor induces pathogen resistance response in Arabidopsis.

Plant Journal. 61: 661-671.

27.

Han Woo Lee and Jungmook Kim* (2010)

Ectopic expression of LBD18/ASL20 results in arrest of plant growth and development with repression of AINTEGUMENTA and PLETHORA genes.

Journal of Plant Biology. 53: 214-221. *Corresponding author.

26.

Eunjoo Seo, Horim Lee, Jin Jeon, Hanna Park, Jungmook Kim, Yoo-Sun Noh, and Ilha Lee* (2009)

Crosstalk between cold response and flowering in Arabidopsis is mediated through the flowering-time gene SOC1 and its upstream negative regulator FLC.

Plant Cell. 21:3185-3197.

25.

Dong Ju Lee, Jong Wha Park, Han Woo Lee, and Jungmook Kim* (2009)

Genome-wide analysis of the auxin-responsive transcriptome downstream of iaa1 and its expression analysis reveal the diversity and complexity of auxin-regulated gene expression.

Journal of Experimental Botany. 60(13): 3935-3957. *Corresponding author.

24.

Han Woo Lee, Nan Young Kim, Dong Ju Lee, and Jungmook Kim* (2009)

LBD18/ASL20 regulates lateral root formation in combination of LBD16/ASL18 downstream of ARF7 and ARF19.

Plant Physiology. 151: 1377-1389. *Corresponding author.

23.

Su-Jin Ku, Jin-Young Park, Suk-Bong Ha, and Jungmook Kim* (2009)

Overexpression of IAA1 with domain II mutation impairs cell elongation and cell division in inflorescences and leaves of Arabidopsis.

Journal of Plant Physiology. 166: 548-553. *Corresponding author

22.

Jungmook Kim* (2008)

Phosphorylation of A-Type ARR to Function as Negative Regulator of Cytokinin Signal Transduction.

Plant Signaling and Behavior. 3: 348-350. *Corresponding author.

21.

Dong Ju Lee, Sunmi Kim, Young-Min Ha, and Jungmook Kim* (2008)

Phosphorylation of Arabidopsis response regulator 7 (ARR7) at the putative phosphor-accepting site is required for ARR7 to act as a negative regulator of cytokinin signaling.

Planta. 227: 577-587. *Corresponding author.

20.

Dong Ju Lee, Jin-Young Park, Su-Jin Ku, Young-Min Ha, Sunmi Kim, Myung Duk Kim, Man-Ho Oh, and Jungmook Kim* (2007)

Genome-wide expression profiling of ARABIDOPSIS RESPONSE REGULATOR 7(ARR7) overexpression in cytokinin response.

Molecular Genetics and Genomics. 277: 115-137. *Corresponding author.

19.

Jung-Eun Park, Ju-Young Park, Youn-Sung Kim, Paul E. Staswick, Jin Jeon, Ju Yun, Sun-Young Kim, Jungmook Kim, Yong-Hwan Lee and Chung-Mo Park* (2007)

GH3-mediated auxin homeostasis links growth regulation with stress adaptation response in Arabidopsis.

Journal of Biological Chemistry. 282: 10036-10046.

18.

Jungmook Kim* (2007)

Perception, transduction, and networks in cold signaling.

Journal of Plant Biology. 50(2): 139-147. *Corresponding author.

17.

Seok Keun Cho, Hoo Sun Chung, Moon Young Ryu, Mi Jin Park, Myeong Min Lee, Young-Yil Bahk, Jungmook Kim, Hyun Sook Pai, and Woo Taek Kim (2006)

Heterologous expression and molecular and cellular characterization of CaPUB1 encoding a hot pepper U-box E3 ubiquitin ligase homolog.

Plant Physiology. 142: 1664-1682.

16.

Jae-Hoon Lee, Do-Myung Kim, Jeong Hee Lee, Jungmook Kim, Jae Wook Bang, Woo Taek Kim, and Hyun-Sook Pai (2005)

Functional characterization of NtCEF1, an AP2/EREBP-type transcriptional activator highly expressed in tobacco callus.

Planta. 222: 211-224.

15.

Hyoun-Joung Kim, Youbong Hyun, Jin-Young Park, Mi-Jin Park, Mi-Kyung Park, Myoung Duck Kim, Hye-Joung Kim, Mi Hyun Lee, Jihyun Moon, Ilha Lee, and Jungmook Kim* (2004)

A genetic link between cold responses and flowering time through FVE in Arabidopsis thaliana.

Nature Genetics. 36: 167-171. *Corresponding author.

14.

Mi-Hye Lim, Joonki Kim, Youn-Sung Kim, Kyung-Sook Chung, Yeon-Hee Seo, Ilha Lee, Jungmook Kim, Choo Bong Hong, Hie-Joon Kim, and Chung-Mo Park* (2004)

A new Arabidopsis gene, FLK, encodes an RNA-binding protein with K homology motifs and regulates flowering time via FLC.

Plant Cell. 16: 731-740.

13.

Jungmook Kim, and John E. Mullet (2003)

A mechanism for light-induced translation of the rbcL mRNA encoding large subunit of ribulose-1,5-bisphosphate carboxylase in barley chlroplasts.

Plant and Cell Physiology. 44: 491-499. * Corresponding author.

12.

Hyoun-Joung Kim, Yun-Kyoung Kim, Jin-Young Park, and Jungmook Kim* (2002)

Light signaling mediated by phytochrome plays an important role in cold-induced gene expression through the C-repeat/dehydration responsive element (C/DRE) in Arabidopsis thaliana.

Plant Journal. 29(6): 693-704. *Corresponding author.

11.

Jin-Young Park, Hye-Joung Kim, and Jungmook Kim* (2002)

Mutation in domain II of IAA1 confers diverse auxin-related phenotypes and represses auxin-activated expression of Aux/IAA genes in steroid regulator inducible system.

Plant Journal. 32: 669-683. * Corresponding author.

10.

Jungmook Kim*, and Stephen P. Mayfield (2002)

The active site of the thioredoxin-like domain of chloroplast protein disulfide isomerase, RB60, catalyzes the redox-regulated binding of chloroplast poly(A)-binding protein, RB47 to the 5’ untranslated region of psbA mRNA.

Plant and Cell Physiology. 43: 1238-1243. *Corresponding author.

9.

Jungmook Kim, and Stephen P. Mayfield (1997)

Protein disulfide isomerase as a regulator of chloroplast translational activation.

Science. 278: 1954-1957.

8.

Jungmook Kim, Klaus Harter, and Athanasios Theologis (1997)

Protein-protein interactions among Aux/IAA proteins.

Proc. Natl. Acad. Sci. USA. 94: 11786-11791.

7.

Jungmook Kim, and Athanasios Theologis (1996)

Cloning a cDNA encoding imidazoleglycerol-phosphate dehydratase, the yeast HIS3 homolog from pea (accession No. U49978) (PGR 96 033).

Plant Physiology. 111: 651.

6.

Jungmook Kim, Lutz A. Eichacker, Wolfhart Rudiger, and John E. Mullet (1994)

Chlorophyll regulates accumulation of the plastid-encoded chlorophyll proteins P700 and D1 by increasing apoprotein stability.

Plant Physiology. 104: 907-916.

5.

Jungmook Kim, and John E. Mullet (1994)

Ribosome binding sites on chloroplast rbcL and psbA mRNAs and light-induced initiation of D1 translation.

Plant Molecular Biology. 25: 437-448.

4.

Jungmook Kim, Patricia Gamble Klein, and John E. Mullet (1994)

Synthesis and turnover of photosystem II reaction protein D1; ribosome pausing increases during chloroplast development.

Journal of Biological Chemistry. 269: 17918-17923.

3.

Jungmook Kim, Patricia Gamble Klein, and John E. Mullet (1994)

Vir-115 gene product is required to stabilize D1 translation intermediates in chloroplasts.

Plant Molecular Biology. 25: 459-467.

2.

Jungmook Kim, Patricia Gamble Klein, and John E. Mullet (1991)

Ribosomes pause at specific sites during synthesis of membrane-bound chloroplast reaction center protein D1.

Journal of Biological Chemistry. 266: 14931-14938.

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